Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015857871.1_cds_XP_016513584.1_26112
CDS Infomation

[gene=LOC107830511] [db_xref=GeneID:107830511] [protein=probable protein phosphatase 2C 62] [protein_id=XP_016513584.1] [location=join(54652..54859,54997..56249,56944..57071,57467..57533,57823..57910,58108..58277,58865..59008,59130..59258,59990..60163)] [gbkey=CDS]
Sequence

ATGGCTGATCCTCTGTGCAAGTTCTTTGACTCTCGCTCTATAACAGGTTCTCAATTCTTC
GCCACCTACTTTTCTACTCAAAAGTCATTCCGACTTGTTTCCCTTCACAACCCAACTCTA
GTCAGAAGAAGGAGAAGAACAAAACCTCTTCATATTGCTTTCTGCTCCATACCCACTTCT
ACAAATCTTGATGTCATCGCCACCCATGAGCATTCGGATGGAAGTCTACTGTTTCGGTTC
GGGGACCCAAGTGAGCTTGCAAACGAGGATGAATTGGAGGAACCCCTTTTGGGGGTTGAA
GAGGTGGAAAGGGATAGTGAGGAGGAGGAATTTAGTGTGGTGAAAGTTATGGATTCTGAT
AATGAGAGAGAAGTCATTGTCAAGAATGTAGAGAGAGAAGCCAGTAGTCAGGCTGTGACT
GCTGCTATTGATGCTGGAGTTTCTGAATCAGTAGTATCTAACAATCCAAGGAGTGATTTT
GTAGAAAGAGAAACTGGATTGAGTACAAATTTAGTCGAAGAATCCACGGATGAAATTGGT
TTAATTTCCCCTGTAGGAATTCAAGATCAATCTGTAGCTGAAGTCCATATTGAGAATGCT
GGACTTGTTGAAGAGATTTTGGAAAAGCAAGATGATACTGAAGCTTCAATTCCACCAACA
GAGAATAGTTTTCCCTCTTTGGAAGTTGAAGAAGAAATGAAGGGTCAATCAACTGAGGAA
TCATTTCAAGAATTTGAGGAGATTTTGCAAAAGAAAGATGATAGTGAAGCTTCAATTCCA
CCACCAGAGAATTCCTTTCCTTCTTTGGAAGTTGAGGAAGAAATGAAGGCTCAATCAAGT
GAGGAGCAATCATTTGAAGAATTGGATGATGACGTGTCACCTCTTTTAGGTTCAGCTGCA
GTAATGCCTGAATATTCTGACTCGGTAAACGCTGAGGAGATTAAAGAATCTGACGGAGAA
ATTTCAAGTCAATTGACAGAGAATGGCGGTGACAAGGATCGCGGTGTTGATTCAATTGGC
TTGATGGAAAACGGCGCTGCTTCAACTGAAGTTCAGGCAGTGGACATTGATAGTGAAAAT
GTCCAACAGATAGAACAAATATCTGAAAATGTTGATCCTATAATGGAAGAGCCCACGGAG
AGTGTTAGTGAGGAAATTAATCTGGGGAATACTGAAACTGTTATTGACGAAATTAGTCCA
AAGATTCATTTGTCTATGGATGCTGAAGACCAGAGTGCCCAAGTCCTTAATTTGGAGAAT
GATGATCAAACCGAGGTGACTACTTTCTCTGCAGATACTGAGGATCAGGCTTCCCAAAAT
GGTACCTTCAAAGATAGTGATGATGCTAATGTGACTGAAGTAATGCCTCATTCTCCTATG
CTGGAGGCTGAATCAATTCTTGATGAGGAAGTTAATCACAACCTCATATCGGTGTCCAAT
GAAGGTGAAAGTCCATTACCGCCGGAAGAAAATCTGCCTAACTCATCCGTGGAAGCAGAA
AAAGAAGAAAATGCAGAAAAAAGTGAGGTCGGGGAAATGTCTGGCCATGAAGTGGTTGAG
GATAAACCTTCAGAAGTCTTAGGCAGCAGAAAGGAAGCTATACCAGCTGAACTAATTCTG
TCCTCTGGTGCTACTTTACTGGAATATCCATCCAAGGCATTGACAGGTGGACATGAAGCA
TATTTTGTTGCTTGTGGAAAGTGGCTAGGTGTAGCCGATGGAGTTGGTTCCTGGTCACTG
GAAGGGAGTGATCCAGGAGTATATGCCAAGGAACTCATGCAAAATAGTGAGTCCATTGTT
TCTCAGTGCGACAAGGATATAATAAATGACCCGAAGCATGTCCTTAATCTGAGCGTCTCA
AAAACAGATTCCCCTGGATCTTCAACAGCCTTGGTTTCTCATTTTGATGGAAAGGATCTT
CATGTGGCTAATATTGGCGACTCTGGATTTATCGTAGTAAGGAATGGCAGTGTTTATAGG
AAGTCATCGCCCATGCTTCATGAATTCAATTTGCCCATACAAATTGAAAAAGGTGATGAT
CCATCTCAACTTCTGGAGGAATACAAGATCGAGTTAGATGAGGGTGACATCATTGTCACT
GCAACAGATGCGCTATTTGACAACTTATATGATCAAGAAATAGTGTCAATCGTCTCAAAG
TCATTGGCAGCTGACAAAAGACCTCAGGAAATTGCGGAGGTTTTGGCGATAAGGGTACAA
GAAGTGGGTAGTTCTGCTTCAGGGAGAAGTCCATTTGCTGATGCAGCTCAGGCAGCCGGA
TATGTTGGGTATACTGGTGGCAAGCGCGACGATGTTGCTGTCATTGTATCAGTAGTTCAA
AAAGGTAATCAGGTCAAATGA

Peptide Sequence

PEP ID

XP_016513584.1
PEP Infomation

PREDICTED: probable protein phosphatase 2C 62 [Nicotiana tabacum]
Sequence

MADPLCKFFDSRSITGSQFFATYFSTQKSFRLVSLHNPTLVRRRRRTKPLHIAFCSIPTS
TNLDVIATHEHSDGSLLFRFGDPSELANEDELEEPLLGVEEVERDSEEEEFSVVKVMDSD
NEREVIVKNVEREASSQAVTAAIDAGVSESVVSNNPRSDFVERETGLSTNLVEESTDEIG
LISPVGIQDQSVAEVHIENAGLVEEILEKQDDTEASIPPTENSFPSLEVEEEMKGQSTEE
SFQEFEEILQKKDDSEASIPPPENSFPSLEVEEEMKAQSSEEQSFEELDDDVSPLLGSAA
VMPEYSDSVNAEEIKESDGEISSQLTENGGDKDRGVDSIGLMENGAASTEVQAVDIDSEN
VQQIEQISENVDPIMEEPTESVSEEINLGNTETVIDEISPKIHLSMDAEDQSAQVLNLEN
DDQTEVTTFSADTEDQASQNGTFKDSDDANVTEVMPHSPMLEAESILDEEVNHNLISVSN
EGESPLPPEENLPNSSVEAEKEENAEKSEVGEMSGHEVVEDKPSEVLGSRKEAIPAELIL
SSGATLLEYPSKALTGGHEAYFVACGKWLGVADGVGSWSLEGSDPGVYAKELMQNSESIV
SQCDKDIINDPKHVLNLSVSKTDSPGSSTALVSHFDGKDLHVANIGDSGFIVVRNGSVYR
KSSPMLHEFNLPIQIEKGDDPSQLLEEYKIELDEGDIIVTATDALFDNLYDQEIVSIVSK
SLAADKRPQEIAEVLAIRVQEVGSSASGRSPFADAAQAAGYVGYTGGKRDDVAVIVSVVQ
KGNQVK

Transcript Sequence

Gene sequence data has not been registered.